| Stromal |
S100A4, DCN |
manual |
| OPC |
OLIG2, PDGFRA, OLIG1, SOX10 |
manual |
| Progenitor Glia |
TOP2A |
manual |
| Oligodendrocyte |
MAG, MOG, OLIG1, MYRF |
manual |
| Endothelial |
PECAM1 |
manual |
| Microglia |
AIF1, PTPRC |
manual |
| Astrocyte |
AQP4, APOE |
manual |
| T_cell |
PTPRC, CD52 |
manual |
| RGC |
PAX6, HES1, CDH4, PTPRZ1 |
manual |
| VLMC |
ABCC9, ADAMTS12, ANO3, CDH6, CEMIP, COL12A1, CSPG4, DCN, FBLN1, IGFBP4, LAMA2, MCTP2, NR2F2, PHLDB2, PLCE1, RFTN1, SERPINA3, TMEM132C |
xenium |
| L4 IT |
ADAMTS16, FSTL4, OTOGL, POU6F2, RORB, SLC17A6 |
xenium |
| L6 IT |
ADAMTS3, C1QL3, SNTB2 |
xenium |
| Sncg |
ADRA1A, ADRA1B, LYPD6B, PROX1, THSD7B |
xenium |
| Glioblastoma (TME) |
AIF1, C1orf162, CAPG, CCL5, CD14, CD163, CD2, CD3G, CD4, CD48, CD52, CD68, CD83, CORO1A, CTSS, CX3CR1, CXCR4, CYTIP, FCER1G, FCGR1A, FCGR3A, GNLY, GPNMB, GPR183, GPR34, GZMA, HLA-DMB, IDO1, IL7R, ITGB2, KLF2, KLF4, KLRB1, LY86, MS4A6A, NKG7, NR4A2, RGS10, RNASET2, S100A4, STXBP2, TGFBI, TMIGD3, TRAC |
xenium |
| Chandelier |
ALK, ANK1, CNTNAP3B, LHX6, NPNT, PVALB, SDK1, TENM1, UNC5B |
xenium |
| Pax6 |
ANGPT1, CCK, CDH4, CXCL14, DDR2, PLD5, RELN, SFRP2, WIF1 |
xenium |
| Sst Chodl |
ANKRD18A, CRHBP, NDST4, NXPH2, SST, TAC1, TACR1, TRPC6 |
xenium |
| Glioblastoma (Cancer cells) |
ANXA1, B4GALNT1, BCAN, CAV1, CHODL, EGFR, ELOVL2, HES1, HILPDA, IDH1, IDH2, IGFBP3, IGFBP5, LOX, MGST1, NNAT, PSEN2, PSENEN, SOX11, SOX2, SOX4, TP53, TRIL, TTYH1 |
xenium |
| Microglia-PVM |
APOE, ARHGAP24, CCL4, CD86, CTSH, FASLG, HLA-DQA1, IFITM3, ITGAM, ITGAX, LRRK1, LYVE1, P2RY12, P2RY13, PTPRC, RGS16, SPI1, TGFB1, TREM2 |
xenium |
| Broad |
APP |
xenium |
| Astrocyte |
AQP4, FGFR3, GJA1, MEIS2, NES, PAX6, RYR3, SOX9, SPON1, TGFB2, THBS1 |
xenium |
| L5/6 NP |
ATP2C2, CD36, CRYM, HTR2C, TPH2, TSHZ2, VWC2L |
xenium |
| OPC |
BRINP3, CALCRL, ITGA8, LRRK2, OLIG1, OLIG2, PDGFRA, PTPRZ1, SEMA5A, SOX10, STK32B, VCAN |
xenium |
| Pvalb |
BTBD11, GAD1, MEPE, MYO5B, RSPO2, SAMD5, SULF1 |
xenium |
| Oligodendrocyte |
CAPN3, CDH1, CLDN11, CNDP1, CNTN2, CTNNA3, EFHD1, ERBB3, ERMN, FGFR2, HHATL, KLK6, MAG, MAL, MOBP, MOG, MYRF, NCSTN, OPALIN, PCSK6, PSEN1, ST18, UGT8 |
xenium |
| Proliferation |
CCNA1, CCNB2, CDK1, CENPF, KIT, MKI67, PCNA, TOP2A |
xenium |
| L6 IT Car3 |
CDH12, GAS2L3, NPY1R, NTNG2, NWD2, POSTN, RASGRP1, SLC26A4, THEMIS, TRPC5, ZDHHC23 |
xenium |
| Endothelial |
CEMIP2, FLT1, NOTCH1, NRP1, PECAM1, RNF144B, STAT3, THSD4 |
xenium |
| Sst |
COL25A1, PLCH1, SYNPR, TRHDE |
xenium |
| L2/3 IT |
CUX2, TESPA1, ZBBX |
xenium |
| Lamp5 |
DNER, PTCHD4 |
xenium |
| Lamp5 Lhx6 |
EYA4, GAD2, LAMP5, LYPD6, MYO16, NTNG1, PDGFD, SPHKAP |
xenium |
| L6 CT |
FILIP1, HS3ST2, HS3ST4, KCNH5 |
xenium |
| L5 IT |
HTR2A, RXFP1 |
xenium |
| L6b |
NPFFR2, ROS1, SLC17A7 |
xenium |
| L5 ET |
PCSK1, RIT2, SLIT3, SNCG, SORCS1 |
xenium |
| Vip |
SLC24A3, VIP |
xenium |